lncRNA-miRNA-mRNA Interactions Analysis

Exploring ceRNA (including lncRNA, circRNA and Pseudogene) interactions can contribute to the functional roles of ncRNAs and their interplay with miRNAs and mRNAs. CD Genomics focuses on investigating the intricate interactions between long non-coding RNAs (lncRNAs), microRNAs (miRNAs), and messenger RNAs (mRNAs), providing comprehensive insights into the regulatory networks in different research fields.


Interactions between long non-coding RNAs (lncRNAs), microRNAs (miRNAs), and messenger RNAs (mRNAs) are mediated through a regulatory mechanism known as competing endogenous RNA (ceRNA) interaction. CeRNA interaction refers to the communication and crosstalk among these RNA species through the shared binding sites for miRNAs. It represents a complex network of interactions that modulate gene expression and play important roles in various biological processes and diseases.

We are committed to providing exceptional lncRNA-miRNA-mRNA interaction analysis services, delivering comprehensive insights into gene regulation and facilitating advancements in various fields of research based on our Sequencing Platform and advanced algorithms. Learn more about our lncRNA-RNA interaction prediction and miRNA-mRNA interactions analysis services and how they can benefit your research or project.


High Compatibility Integrated Analysis Cutting-edge Algorithms One-Stop Solution
Consider both coding and non-coding regions of the genome. Combine experimental data with computational analysis to efficiently narrow down the relationships. Identify lncRNAs, predict miRNA targets, and decipher the interactions between lncRNAs, miRNAs, and mRNAs. One-stop solution from sample QC, library construction, to sequencing and data analysis.

Project Workflow

Sample Preparation

1. Sample Preparation

Quality assessment and quantification

Library Preparation

2. Library Preparation

mRNA, small RNA and lncRNA library preparation


3. Sequencing

Illumina Nextseq/HiSeq

Data Analysis

4. Data Analysis

Visualize and preprocess results, and perform custom bioinformatics analysis.

Service Pipeline

Sample Requirements

RNA sample (concentration ≥ 200 ng/uL, quantity ≥ 1 ug)
1.8 ≤ OD260/280 ≤ 2.2, OD260/230≥2.0, RIN ≥ 6.5, 28S:18S≥1.0.
Please make sure that the RNA is not degraded.
Sample Storage: RNA can be dissolved in ethanol or RNA-free ultra-pure water and stored at -80°C. RNA should avoid repeated freezing and thawing.
Shipping Method: When shipping RNA samples, the RNA sample is stored in a 1.5 mL Eppendorf tube, sealed with a sealing film. Shipments are generally recommended to contain 5-10 pounds of dry ice per 24 hours.
Deliverable: FastQ, BAM, coverage summary, QC report, custom bioinformatics analysis.

* For Research Use Only. Not for use in diagnostic procedures.

Research Areas
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